INQUA Working Group on Data-Handling Methods

Newsletter 6: July 1991

SARI: A HyperCard STACK FOR DESCRIBING AND IDENTIFYING SPORES AND POLLEN GRAINS

E. J. Cushing
Dept. Ecology, Evolution & Behavior
University of Minnesota
318 Church St. SE
Minneapolis, MN 55455
CUSHING@UMNACVX

SARI (Sporomorph Analysis, Retrieval, and Identification) was designed to facilitate the thorough morphological description of pollen and spores in a large, unfamiliar flora where published keys do not exist. Descriptions of both reference grains and unknown fossil grains are kept in the same database. A new unknown grain may be compared with the descriptions in the database by searching by key words for any number of characters in any combination or order.

Descriptions are entered by clicking buttons that correspond to common characters of pollen grains and pteridophyte spores. The buttons for the most common characters (class, basic structure and sculpture, symmetry, and size classes) are on a single card (Fig. 1), with options to go to additional Description cards for more detailed and special characters. The description thus entered is recorded, in abbreviated and standard form, on a Morphology card for the grain being described (Fig. 2). The description can be edited on the card, and new information added, from the keyboard. The character states and their abbreviations used in the stack follow those defined by Iversen & Troels-Smith (1950), with additions and modifications by Cushing. An accompanying Help stack defines and illustrates the characters and abbreviations.


Fig. 1
Fig. 1. The first card for describing grains. Unknown #0379 is described here as a new grain: it is tricolporate, tectate, psilate; has a medium exine index; is subspheroidal and in size class media (25 - 50 µm).


Fig. 2
Fig. 2. The Morphology card for Unknown #0379, with the description completed.
Each grain in the database is given a distinctive identification number, and the data for each grain in the database are displayed on three cards. The Morphology card describes the grain. A Name card gives information about the taxonomy and location of the grain, with space for references to literature, notes on comparison with other grains, and a definition of the pollen or spore type (the Name cards for reference and unknown grains differ somewhat). Morphology and Name cards are required for all grains in the database, but the information on them may be as complete or incomplete as desired.

The third card, an Image card, is optional (Fig. 3). It provides space for graphic illustrations of the grain. These may be drawn directly on the screen with the graphic tools included in HyperCard, or they may be pasted in from scans of photographs or line drawings. The resolution of images so entered into the stack is limited by the resolution of the Macintosh screen (72 pixels per inch). An alternative now being planned is to display images acquired by video camera and stored on a hard disk (or ultimately a CD ROM). The images can be accessed quickly from the HyperCard stack in a similar way, but much higher resolution is achieved. The Macintosh must be fitted with a video card for this alternative.


Fig. 3
Fig. 3. The Image card for Unknown #0379. At the left are equatorial and polar views; in the center are sketches of the LO-pattern.
The database can be searched to identify new grains as they are encountered at the microscope. Distinctive characters of the new grain are entered by clicking buttons on the Description cards, and a Search button starts the search. All grains in the database that agree with the description are displayed, one at a time. If no match is made, the new grain may be assigned an identification number and added to the database as an unknown. Descriptions can be expanded, and new reference grains added at any time to distinguish among similar morphological types. The database thus grows in a natural way as it is used.

SARI requires a Macintosh with at least 1 MB memory running System 6.0.5 or later and HyperCard 2.0. A hard disk becomes necessary as the database expands. With a basic knowledge of HyperTalk, the HyperCard scripting language, the user can modify the stack to taste.

A copy of SARI on a 3.5" floppy disk may be obtained by sending a blank disk to me at the address given at the head of this article.

Reference

Iversen, Johs. and Troels-Smith, J. 1950. Pollenmorfologiske definitioner og typer. Danm. Geol. Unders. IV/3, 8, 54 p. + 16 Tables.


Copyright © 1991 E.J. Cushing
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